HsaEX0073094 @ hg19
Exon Skipping
Gene
ENSG00000197279 | ZNF165
Description
zinc finger protein 165 [Source:HGNC Symbol;Acc:12953]
Coordinates
chr6:28239632-28240564:+
Coord C1 exon
chr6:28239632-28239712
Coord A exon
chr6:28239800-28240116
Coord C2 exon
chr6:28240447-28240564
Length
317 bp
Sequences
Splice sites
3' ss Seq
ACTACTCTACTTGGGAACAGGGA
3' ss Score
3.73
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
GAGTGTCTCTGAAGATACAGTCCAAAGAAAGTTCTCCAAAACAAGGAGAACAGTCTGAAGCTGGGGATGGCAACAGCATTG
Seq A exon
GGATTCAAGCTGCAAGGAAACAGTAAAGGCCTTGGACAGGAGCCATTGTGCAAACAATTCAGGCAGTTGCGTTATGAAGAGACCACAGGACCTCGAGAAGCACTAAGTCGGCTCCGGGAGCTCTGTCAACAGTGCTACAGCCCGAGACCCATACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTTCTGATCATCCTGCCTAAGGAGCTCCAGGCCCGGGTGCAGGAGCATCACCCAGAGAGCAGGGAGGACGTGGTTGTTGTTCTGGAGGATTTGCAGCTGGATCTTGGAGAAACAGGACAACAGGTG
Seq C2 exon
GACCCAGACCAGCCAAAGAAACAAAAAATACTTGTGGAGGAGATGGCCCCTCTGAAAGGAGTACAGGAACAGCAGGTTCGGCATGAGTGTGAAGTTACAAAGCCTGAGAAAGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197279-'5-7,'5-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTCTCTGAAGATACAGTCCA
R:
CCTTCTCTTTCTCAGGCTTTGT
Band lengths:
198-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)