BtaEX6098756 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031869 | ZSCAN26
Description
zinc finger and SCAN domain containing 26 [Source:HGNC Symbol;Acc:HGNC:12978]
Coordinates
chr23:30165486-30168136:-
Coord C1 exon
chr23:30168060-30168136
Coord A exon
chr23:30165913-30166394
Coord C2 exon
chr23:30165486-30165603
Length
482 bp
Sequences
Splice sites
3' ss Seq
TCTTGTTATTACATTTTCAGGGG
3' ss Score
8.32
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
AGAGCTATAGAGGCCAGAGGTTATTTCATCTCTGTATCTCCAGCAACTAAGAGTGTGGCACCTAGACAATAAATGAG
Seq A exon
GGGTATCCCTGAGGAGGCAGTCAAAAGAAAGTTGCCCCAAATAGAGCAGTCTGAAGGTGGGGATGGCGATAGCATGGGGAACCGTTCCTTCCCTGGCTCCTGTGAACCTGAAGAAGGAGGGGCTTCAGGTGGTAAAGGAGGATCACCTCTCTGCTCGGGAACAGGGAGTCAAGCTTCAGGGAAACGGCACAGGCTTCAGGCAGGAGCCCCTGTGTAAGCGGTTCAGGCAGTTGCGCTATGAAGAGACCACAGGACCTCGAGAGGCCCTGAGCCGGCTCCGGGAACTCTGCCGACAATGGCTACAGCCTGAGACCCACACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCTGAGGAGCTTCAGGCCCGGTTGCGGGAGCATCACCTGGAGAGCGGGGAAGATGCGGTGGTTTTCCTGGAGGATTTGCAGCTGGAGCTGGGAGGAACAGGACAACAGGAG
Seq C2 exon
GACCCAAACCAGGCAAAGAAACAGGAAGTGCTCATGGAGAAGACAGCCCCTGGAAAAGCCACGCCAGAGCGGCAGGTCCAACCTGAAGGTGACGTTCCACAGCCCGAGAGAGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031869-'6-7,'6-5,8-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.129 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=WD(100=68.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCTATAGAGGCCAGAGGT
R:
CTTCTCTCTCTCGGGCTGTGG
Band lengths:
194-676
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]