RnoEX6053682 @ rn6
Exon Skipping
Gene
ENSRNOG00000053518 | Zscan26
Description
zinc finger and SCAN domain containing 26 [Source:RGD Symbol;Acc:727885]
Coordinates
chr17:45199178-45200253:+
Coord C1 exon
chr17:45199178-45199229
Coord A exon
chr17:45200014-45200087
Coord C2 exon
chr17:45200194-45200253
Length
74 bp
Sequences
Splice sites
3' ss Seq
TCTGTGACTTGTGTTTTTAGGAG
3' ss Score
9.83
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
CTATTAATAGGTCATGCAGCTCCGAGCCTCTCACATCCTTGCTACTTGAGAG
Seq A exon
GAGTCTCTCAGGATACAGTCAAAAGAAAGGTCTCCAAAACAAAGTGCCTGAAGCAAGGGATGGCACTGGCCTTG
Seq C2 exon
ATCCACCCTAACAAGCGTGCATACTCTTTGGCTCCCCTGAATCTGAAGGAGGAGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053518-'2-5,'2-4,3-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATTAATAGGTCATGCAGCTCCGA
R:
TGAAGCTCCTCCTTCAGATTCA
Band lengths:
111-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]