MmuEX6057537 @ mm10
Exon Skipping
Gene
ENSMUSG00000022228 | Zscan26
Description
zinc finger and SCAN domain containing 26 [Source:MGI Symbol;Acc:MGI:3531417]
Coordinates
chr13:21449274-21453727:-
Coord C1 exon
chr13:21453578-21453727
Coord A exon
chr13:21449441-21449516
Coord C2 exon
chr13:21449274-21449333
Length
76 bp
Sequences
Splice sites
3' ss Seq
TCTGTGACTTGTGTTTTTAGGAG
3' ss Score
9.83
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GTGTGACTGACCCTGCGACCAGGGCGAGGGGGACGTACGGTGATCGGGTTCCAGCGGAGAGAGAACCCGCAAACTTGGGACTCTCGAGCGGAGGGTCTGGTTGATACACAGAAACTCTCCACACCTCGGAGCTGGGAGGACCAGAAGCTG
Seq A exon
GAGTGTCTCTCAGGATACAGTCAAGAGAAAAGTCTCCAAAACAGAGTGCCTGAAGCAAGGGATGGCACTGGCCTTG
Seq C2 exon
ATCCACCCTAGCAAGCGTGCATACTCTTTGGCTCCCCTGAATCTGAAGGAGGAGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022228-'1-3,'1-2,4-3=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.500 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTACGGTGATCGGGTTC
R:
TCCTTCAGATTCAGGGGAGCC
Band lengths:
169-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types