MmuEX6057537 @ mm9
Exon Skipping
Gene
ENSMUSG00000022228 | Zfp187
Description
zinc finger protein 187 [Source:MGI Symbol;Acc:MGI:3531417]
Coordinates
chr13:21539655-21545596:-
Coord C1 exon
chr13:21545447-21545596
Coord A exon
chr13:21541310-21541385
Coord C2 exon
chr13:21539655-21539763
Length
76 bp
Sequences
Splice sites
3' ss Seq
TCTGTGACTTGTGTTTTTAGGAG
3' ss Score
9.83
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GTGTGACTGACCCTGCGACCAGGGCGAGGGGGACGTACGGTGATCGGGTTCCAGCGGAGAGAGAACCCGCAAACTTGGGACTCTCGAGCGGAGGGTCTGGTTGATACACAGAAACTCTCCACACCTCGGAGCTGGGAGGACCAGAAGCTG
Seq A exon
GAGTGTCTCTCAGGATACAGTCAAGAGAAAAGTCTCCAAAACAGAGTGCCTGAAGCAAGGGATGGCACTGGCCTTG
Seq C2 exon
GACTCAGCCCAAAGAAGCAGACCAACGGTGCTGGTTGGCGAGCCAGCCCCTCGCAGGGAAGCACGGGAGCAGCCTGGGTGTGCGCTTCCTCAGAAGCCTGAGGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022228-'0-4,'0-1,2-4=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.500 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACTTGGGACTCTCGAGCG
R:
CTTCTGAGGAAGCGCACACC
Band lengths:
177-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: