RnoEX0102306 @ rn6
Exon Skipping
Gene
ENSRNOG00000053518 | Zscan26
Description
zinc finger and SCAN domain containing 26 [Source:RGD Symbol;Acc:727885]
Coordinates
chr17:45200014-45201705:+
Coord C1 exon
chr17:45200014-45200087
Coord A exon
chr17:45201011-45201328
Coord C2 exon
chr17:45201600-45201705
Length
318 bp
Sequences
Splice sites
3' ss Seq
ACTACTGTGCTTGGGAACAGGGA
3' ss Score
5.17
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GAGTCTCTCAGGATACAGTCAAAAGAAAGGTCTCCAAAACAAAGTGCCTGAAGCAAGGGATGGCACTGGCCTTG
Seq A exon
GGATTCAAAGTTCAAGGGGACAGAAAAGGCGTTGGGCAGGAGCCATTGTGCAAACAGTTCAGGCAGCTGCGCTATGAGGAAAGCACTGGACCTCGAGAGGTTTTACGCCGACTCAGGGAGCTCTGCAGACAGTGGCTGCGGCCTGAGACCCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTACTGGAGCAGTTCTTGACCATCCTGCCAAGAGATCTGCAGGTCCAGGTGCTCGAGCACCACCCAGAGACTGGGGAGGACCTGGTGGGAATACTGGAAGATTTGCAGCTGGATCGTGGAAAAGCGGGAGAGCAGAAG
Seq C2 exon
GACTCAGCCCAAAGAACCAGACCGACTGTGCTGGTTGGAGAGCCAGCCCCTCATAGAGAAGCACAGGAGCAACCGGGGTTTGTGGTTCTGAAGCCTGAGGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053518_MULTIEX2-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.142 C2=0.972
Domain overlap (PFAM):
C1:
NO
A:
PF0202312=SCAN=WD(100=90.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]