RnoINT0169488 @ rn6
Intron Retention
Gene
ENSRNOG00000053518 | Zscan26
Description
zinc finger and SCAN domain containing 26 [Source:RGD Symbol;Acc:727885]
Coordinates
chr17:45200014-45200253:+
Coord C1 exon
chr17:45200014-45200087
Coord A exon
chr17:45200088-45200193
Coord C2 exon
chr17:45200194-45200253
Length
106 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
CCACACATACCTCTTCCCAGATC
3' ss Score
5.89
Exon sequences
Seq C1 exon
GAGTCTCTCAGGATACAGTCAAAAGAAAGGTCTCCAAAACAAAGTGCCTGAAGCAAGGGATGGCACTGGCCTTG
Seq A exon
GTGAGTGTGTGTTCATGTGTTTTTCCTCTTTTTTTTTTTTTAAACTTCTTTGAGAGTTTTCAACATGTTCTGATCATATTCTGTTCCCACACATACCTCTTCCCAG
Seq C2 exon
ATCCACCCTAACAAGCGTGCATACTCTTTGGCTCCCCTGAATCTGAAGGAGGAGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053518:ENSRNOT00000080047:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCTCTCAGGATACAGTCAAA
R:
AGCTCCTCCTTCAGATTCAGGG
Band lengths:
130-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]