HsaEX0000091 @ hg19
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr15:57182212-57210767:-
Coord C1 exon
chr15:57209738-57210767
Coord A exon
chr15:57209263-57209410
Coord C2 exon
chr15:57182212-57182365
Length
148 bp
Sequences
Splice sites
3' ss Seq
ACTACATTTTTTGTTTTCAGTTG
3' ss Score
9.05
5' ss Seq
TTGGTAAAC
5' ss Score
3.22
Exon sequences
Seq C1 exon
AGGGCAAAACGTACCTCAAACCAGACAAAGCCTTGTGAGCTTCAGGTTCTCAAATACCCCACTCACCCAGACCCCACATCTCCAGTCAGCCCCTCGCACCCAAATCCCATTCGGAGCAACCGAACTGCACGTGGGACTAGTTCTTGGGAATGGATCAAGCCAGTCTCTTCATCTAACGGAGACAGCCCTGGGTGGCTCTGTCACACAGCCACTGTCTTGTGCACAAGTTCTGAACTTGGCCTCAGAGAAGCCCCAGAGTAGAAAGAAGACAAAATAAGCCCCAGTTCTTCGATTCTGGGCTGAAGTGAGATTTTCTTGAATGGCAGCCATTGTTTTGCCTCTTAGGTAAGTGAGTGCAGTAAAGACCGGTAAGGCCCACGCAGAAGAAACACTGAGGAAAGAAGACACTTCCAAAGTAACAAATGGGAGGAAGCAGCCAACGCCCGAGGACAACATGGCAAGAAGGAGCCTTTGGATTCCGGACTGGGATGGAAAGAGAG
Seq A exon
TTGATTGAATCCCGGAATTTGGAAACCCCAGATACGGAGGGCGGACGGTACAACCGGAGCTGTCAGGTGGATTTCCAAGGCTTTGCATTGGCTGTACCTGAAACTTATGGTGGCCTAGACTCCCCAGTATCCACTCTTCCTTATCTTG
Seq C2 exon
AATCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGTGCAATCTCAAGCTCACTGCAACCTCTGTGCAGGTTCAAGTGGAGAATCTGAATCTTGATGATATAATTGGAACTCTTCAGCCAAGCCATATCTAACAGAACTATCTTCAACTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000259484_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGGCCCACGCAGAAGAAAC
R:
GGCTTGGCTGAAGAGTTCCAA
Band lengths:
254-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)