HsaEX0000091 @ hg38
Exon Skipping
Gene
ENSG00000137871 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:HGNC:25953]
Coordinates
chr15:56890014-56918571:-
Coord C1 exon
chr15:56917540-56918571
Coord A exon
chr15:56917065-56917212
Coord C2 exon
chr15:56890014-56890167
Length
148 bp
Sequences
Splice sites
3' ss Seq
ACTACATTTTTTGTTTTCAGTTG
3' ss Score
9.05
5' ss Seq
TTGGTAAAC
5' ss Score
3.22
Exon sequences
Seq C1 exon
AGGGCAAAACGTACCTCAAACCAGACAAAGCCTTGTGAGCTTCAGGTTCTCAAATACCCCACTCACCCAGACCCCACATCTCCAGTCAGCCCCTCGCACCCAAATCCCATTCGGAGCAACCGAACTGCACGTGGGACTAGTTCTTGGGAATGGATCAAGCCAGTCTCTTCATCTAACGGAGACAGCCCTGGGTGGCTCTGTCACACAGCCACTGTCTTGTGCACAAGTTCTGAACTTGGCCTCAGAGAAGCCCCAGAGTAGAAAGAAGACAAAATAAGCCCCAGTTCTTCGATTCTGGGCTGAAGTGAGATTTTCTTGAATGGCAGCCATTGTTTTGCCTCTTAGGTAAGTGAGTGCAGTAAAGACCGGTAAGGCCCACGCAGAAGAAACACTGAGGAAAGAAGACACTTCCAAAGTAACAAATGGGAGGAAGCAGCCAACGCCCGAGGACAACATGGCAAGAAGGAGCCTTTGGATTCCGGACTGGGATGGAAAGAGAG
Seq A exon
TTGATTGAATCCCGGAATTTGGAAACCCCAGATACGGAGGGCGGACGGTACAACCGGAGCTGTCAGGTGGATTTCCAAGGCTTTGCATTGGCTGTACCTGAAACTTATGGTGGCCTAGACTCCCCAGTATCCACTCTTCCTTATCTTG
Seq C2 exon
AATCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGTGCAATCTCAAGCTCACTGCAACCTCTGTGCAGGTTCAAGTGGAGAATCTGAATCTTGATGATATAATTGGAACTCTTCAGCCAAGCCATATCTAACAGAACTATCTTCAACTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137871-'0-6,'0-0,3-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGGCCCACGCAGAAGAAAC
R:
GGCTTGGCTGAAGAGTTCCAA
Band lengths:
254-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development