HsaEX0000241 @ hg38
Exon Skipping
Gene
ENSG00000154263 | ABCA10
Description
ATP binding cassette subfamily A member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr17:69175406-69182290:-
Coord C1 exon
chr17:69182153-69182290
Coord A exon
chr17:69178920-69179008
Coord C2 exon
chr17:69175406-69175513
Length
89 bp
Sequences
Splice sites
3' ss Seq
ATAACCTTCTTCTCTTGCAATGT
3' ss Score
2.31
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GATTACAGATTTTCTGTTGCGTGTAATACCAAGAAATTGAATTGTTTTCCTGTTCTTATGGGAATTGTTAGCAATGCCCTTATGGGAATTTTTAACTTCACGGAGCTTATTCAAATGGAGAGCACTTCATTTTCTCGT
Seq A exon
TGTATATAAATCTAGACAAAATTAATGTTCGGAAGGCTTGTCAAGGAAGCAATTTGGATATTAAATTGTCTCCTGTGGATCCAGGGAAG
Seq C2 exon
GATGACATAGTGCTGGATCTTGGTTTTATAGATGGGTCCATATTTTTGTTGTTGATCACAAACTGCGTTTCTCCTTTTATCGGCATGAGCAGCATCAGCGATTATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154263-'35-45,'35-43,36-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.5=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTTAGCAATGCCCTTATGGG
R:
CTGATGCTGCTCATGCCGATA
Band lengths:
173-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development