HsaEX0000281 @ hg19
Exon Skipping
Gene
ENSG00000154265 | ABCA5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:35]
Coordinates
chr17:67310455-67321958:-
Coord C1 exon
chr17:67321840-67321958
Coord A exon
chr17:67313846-67313964
Coord C2 exon
chr17:67310455-67310571
Length
119 bp
Sequences
Splice sites
3' ss Seq
CACTTCTATTTTGAGTTCAGCTG
3' ss Score
1.06
5' ss Seq
TAGGTACAA
5' ss Score
3.23
Exon sequences
Seq C1 exon
AGACAGCGTCTCGGGCTAGAGTGCAGTGGTGCGATCAAAGTTCACTGCAGCCTTGAACGTCTGGACTCTAGGGACCCTGCTGAATAGCTGGGGCTACAGGCGTGTGTCACTGCGCCCAG
Seq A exon
CTGGAATGAAACCTCTGAAGAATCGAGATAGCTCCAATAGAGGTCCACAGGCAGAAAGGATTTCAAGGATCTTCAAAGGGTAAATGTACCCTGGAAGAGGGATACTGGACCTGTGATAG
Seq C2 exon
GTTTATTCAGAAAACATGTCCACTGCAATTAGGGAGGTAGGAGTTTGGAGACAGACCAGAACACTTCTACTGAAGAATTACTTAATTAAATGCAGAACCAAAAAGAGTAGTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154265_MULTIEX2-2/2=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF126982=ABC2_membrane_3=PU(1.8=14.7),PF126063=RELT=PU(7.1=5.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCGTCTCGGGCTAGAG
R:
TGAACACTACTCTTTTTGGTTCTGC
Band lengths:
234-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)