HsaEX0000281 @ hg38
Exon Skipping
Gene
ENSG00000154265 | ABCA5
Description
ATP binding cassette subfamily A member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr17:69314314-69325811:-
Coord C1 exon
chr17:69325699-69325811
Coord A exon
chr17:69317705-69317823
Coord C2 exon
chr17:69314314-69314430
Length
119 bp
Sequences
Splice sites
3' ss Seq
CACTTCTATTTTGAGTTCAGCTG
3' ss Score
1.06
5' ss Seq
TAGGTACAA
5' ss Score
3.23
Exon sequences
Seq C1 exon
CGTCTCGGGCTAGAGTGCAGTGGTGCGATCAAAGTTCACTGCAGCCTTGAACGTCTGGACTCTAGGGACCCTGCTGAATAGCTGGGGCTACAGGCGTGTGTCACTGCGCCCAG
Seq A exon
CTGGAATGAAACCTCTGAAGAATCGAGATAGCTCCAATAGAGGTCCACAGGCAGAAAGGATTTCAAGGATCTTCAAAGGGTAAATGTACCCTGGAAGAGGGATACTGGACCTGTGATAG
Seq C2 exon
GTTTATTCAGAAAACATGTCCACTGCAATTAGGGAGGTAGGAGTTTGGAGACAGACCAGAACACTTCTACTGAAGAATTACTTAATTAAATGCAGAACCAAAAAGAGTAGTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154265_MULTIEX1-4/5=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF126982=ABC2_membrane_3=PU(1.0=11.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCGGGCTAGAGTGCAGT
R:
AACACTACTCTTTTTGGTTCTGCA
Band lengths:
226-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development