HsaEX0000280 @ hg38
Exon Skipping
Gene
ENSG00000154265 | ABCA5
Description
ATP binding cassette subfamily A member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr17:69314314-69327101:-
Coord C1 exon
chr17:69327052-69327101
Coord A exon
chr17:69325699-69325817
Coord C2 exon
chr17:69314314-69314430
Length
119 bp
Sequences
Splice sites
3' ss Seq
CATGTCTTTTATTTTTAAAGAGA
3' ss Score
6.17
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
AACAGACTGAGCGCGTCCAGGCCTGACAGCTCTGCGGCTCGGGCCCTGAG
Seq A exon
AGACAGCGTCTCGGGCTAGAGTGCAGTGGTGCGATCAAAGTTCACTGCAGCCTTGAACGTCTGGACTCTAGGGACCCTGCTGAATAGCTGGGGCTACAGGCGTGTGTCACTGCGCCCAG
Seq C2 exon
GTTTATTCAGAAAACATGTCCACTGCAATTAGGGAGGTAGGAGTTTGGAGACAGACCAGAACACTTCTACTGAAGAATTACTTAATTAAATGCAGAACCAAAAAGAGTAGTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154265_MULTIEX1-2/5=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF126982=ABC2_membrane_3=PU(1.0=11.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGACTGAGCGCGTCCAG
R:
ACACTACTCTTTTTGGTTCTGCA
Band lengths:
163-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development