HsaEX0000746 @ hg38
Exon Skipping
Gene
ENSG00000159842 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr17:1011846-1012797:-
Coord C1 exon
chr17:1012688-1012797
Coord A exon
chr17:1012474-1012557
Coord C2 exon
chr17:1011846-1011985
Length
84 bp
Sequences
Splice sites
3' ss Seq
CCCCCGCTCGGCGGTGGCAGATG
3' ss Score
5.51
5' ss Seq
AAGGTCTCT
5' ss Score
0.9
Exon sequences
Seq C1 exon
ATCAAAGTGGAATTTTCCATGAAATTCACCAGCCGAGATATGAGCCTGAAGAGGACCCCGTCCAAAAAGCAGACCGGCGTCTTCGGTGTGAAGATCAGCGTGGTGACGAA
Seq A exon
ATGGCCGGTGTGGATCTAGAGTGGCCGCAGAGGCGCTCACAGGACACTTCAGAAGCACGCGAGCCAGCACCTAAACGCTGGAAG
Seq C2 exon
GCGGGAGCGCTCCAAGGTGCCCTACATCGTCCGGCAGTGTGTGGAGGAGGTGGAGAAGAGGGGTATCGAGGAGGTTGGCATCTACAGGATATCGGGCGTGGCCACGGACATCCAGGCGCTCAAGGCCGTCTTCGATGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159842_MULTIEX1-15/21=14-16
Average complexity
S
Mappability confidence:
95%=95=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062022=RhoGAP=PU(26.1=83.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGAGCCTGAAGAGGACCCC
R:
CCACGCCCGATATCCTGTAGA
Band lengths:
173-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development