HsaEX6019762 @ hg38
Exon Skipping
Gene
ENSG00000159842 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr17:1011846-1050634:-
Coord C1 exon
chr17:1050537-1050634
Coord A exon
chr17:1050050-1050181
Coord C2 exon
chr17:1011846-1011985
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTTGTCCCATCTTTCCCCAGGAG
3' ss Score
12.13
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ACCTGTACTGTACCCTGGAGGTGGATTCCTTCGGCTATTTTGTCAGCAAAGCCAAAACCAGGGTGTTCCGGGACACAGCGGAGCCCAAGTGGGATGAG
Seq A exon
GAGTTTGAGATCGAGCTGGAGGGCTCCCAGTCCCTGAGGATCCTGTGCTATGAGAAGTGCTATGACAAGACCAAGGTCAACAAGGACAACAATGAGATCGTGGACAAGATCATGGGCAAAGGACAGATCCAG
Seq C2 exon
GCGGGAGCGCTCCAAGGTGCCCTACATCGTCCGGCAGTGTGTGGAGGAGGTGGAGAAGAGGGGTATCGAGGAGGTTGGCATCTACAGGATATCGGGCGTGGCCACGGACATCCAGGCGCTCAAGGCCGTCTTCGATGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159842_MULTIEX1-12/21=11-16
Average complexity
C3*
Mappability confidence:
93%=93=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=0.005 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PU(18.9=90.9)
A:
PF0016825=C2=PD(44.9=90.9)
C2:
PF0062022=RhoGAP=PU(26.1=83.3)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTACTGTACCCTGGAGG
R:
CATCGAAGACGGCCTTGAGC
Band lengths:
235-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains