HsaEX6019759 @ hg38
Exon Skipping
Gene
ENSG00000159842 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr17:1050050-1058045:-
Coord C1 exon
chr17:1057970-1058045
Coord A exon
chr17:1056998-1057102
Coord C2 exon
chr17:1050050-1050181
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCTCTCGGCTCTCCCTCCAGATC
3' ss Score
12.28
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
Exon sequences
Seq C1 exon
AGTTACCTGTTCCTACTGTCCTCGGACTACGAGAGGTCAGAGTGGAGAGAAGCAATTCAGAAACTACAGAAGAAGG
Seq A exon
ATCTCCAGGCCTTTGTCCTGAGCTCAGTGGAGCTCCAGGTGCTCACAGGATCCTGTTTCAAGCTTAGGACTGTACACAACATTCCTGTCACCAGCAATAAAGACG
Seq C2 exon
GAGTTTGAGATCGAGCTGGAGGGCTCCCAGTCCCTGAGGATCCTGTGCTATGAGAAGTGCTATGACAAGACCAAGGTCAACAAGGACAACAATGAGATCGTGGACAAGATCATGGGCAAAGGACAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159842_MULTIEX1-9/21=8-12
Average complexity
C3
Mappability confidence:
92%=92=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.025 C2=0.005
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(14.6=88.5)
A:
NO
C2:
PF0016825=C2=PD(44.9=90.9)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTTCCTACTGTCCTCGG
R:
TGGATCTGTCCTTTGCCCATG
Band lengths:
203-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains