HsaEX6019761 @ hg38
Exon Skipping
Gene
ENSG00000159842 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr17:1050050-1056109:-
Coord C1 exon
chr17:1056035-1056109
Coord A exon
chr17:1050537-1050634
Coord C2 exon
chr17:1050050-1050181
Length
98 bp
Sequences
Splice sites
3' ss Seq
CGTCTGTCCTTCCCCCACAGACC
3' ss Score
12.7
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ACGATGAGTCTCCAGGACTCTATGGCTTCCTTCATGTCATCGTCCACTCTGCCAAGGGATTTAAGCAATCAGCCA
Seq A exon
ACCTGTACTGTACCCTGGAGGTGGATTCCTTCGGCTATTTTGTCAGCAAAGCCAAAACCAGGGTGTTCCGGGACACAGCGGAGCCCAAGTGGGATGAG
Seq C2 exon
GAGTTTGAGATCGAGCTGGAGGGCTCCCAGTCCCTGAGGATCCTGTGCTATGAGAAGTGCTATGACAAGACCAAGGTCAACAAGGACAACAATGAGATCGTGGACAAGATCATGGGCAAAGGACAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159842_MULTIEX1-11/21=10-12
Average complexity
S
Mappability confidence:
93%=93=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.006 C2=0.005
Domain overlap (PFAM):
C1:
PF0016825=C2=PU(16.9=57.7)
A:
PF0016825=C2=FE(36.0=100)
C2:
PF0016825=C2=PD(44.9=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATCGTCCACTCTGCCAAG
R:
TGGATCTGTCCTTTGCCCATG
Band lengths:
171-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains