DreEX0016846 @ danRer10
Exon Skipping
Gene
ENSDARG00000079286 | bcr
Description
breakpoint cluster region [Source:ZFIN;Acc:ZDB-GENE-040724-43]
Coordinates
chr21:17208539-17210216:+
Coord C1 exon
chr21:17208539-17208613
Coord A exon
chr21:17208741-17208838
Coord C2 exon
chr21:17210085-17210216
Length
98 bp
Sequences
Splice sites
3' ss Seq
CTGCATCTCCTTTACTTCAGATC
3' ss Score
8.56
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
AGGATGAATCTACTGGACTGTATGGATTCCTGAATGTAATCGTCCATTCTGCCTCTGGACTTAAACAGAGCTTAA
Seq A exon
ATCTGTATTGCACATTAGAGGTGGACTCTTTCGGCATCTTTGTGAATAAAGCCAAAACAAGAGTGTACAGATACACCACAGAACCCAAGTGGAATGAG
Seq C2 exon
GAGTTTGAGATTGAGTTGGAAGGCTCTCATACATTGCGGCTACTTTGTTACGAGAAAAGCTACAACAAAGCCAAGGTGAATAAGGAGGATGGAGAGAGCACGGACAGAATTATGGGCAAAGGACAAATGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079286-'21-20,'21-19,22-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.386
Domain overlap (PFAM):
C1:
PF0016825=C2=PU(17.0=57.7)
A:
PF0016825=C2=FE(36.4=100)
C2:
PF0016825=C2=PD(44.3=88.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGTCCATTCTGCCTCTGGA
R:
GCATTTGTCCTTTGCCCATAA
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]