MmuEX6049010 @ mm9
Exon Skipping
Gene
ENSMUSG00000009681 | Bcr
Description
breakpoint cluster region [Source:MGI Symbol;Acc:MGI:88141]
Coordinates
chr10:74623075-74630983:+
Coord C1 exon
chr10:74623075-74623149
Coord A exon
chr10:74628790-74628887
Coord C2 exon
chr10:74630852-74630983
Length
98 bp
Sequences
Splice sites
3' ss Seq
TCCCTGTCACTTTGTCACAGATC
3' ss Score
9.35
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
ATGACGAGTCTCCTGGACTCTACGGCTTCCTGCATGTCATCGTCCACTCAGCCACCGGCTTTAAGCAGAGCTCAA
Seq A exon
ATCTCTACTGCACCCTGGAGGTGGATTCCTTTGGATATTTTGTGAATAAAGCAAAGACTCGAGTCTACAGGGACACAACTGAGCCAAACTGGAATGAG
Seq C2 exon
GAGTTTGAGATAGAGCTAGAAGGCTCCCAGACCCTGCGGATACTATGTTATGAAAAGTGTTACAACAAAATGAAGATGACGAAGGAAGATGGTGAGAGCGCAGACAAGCTCATGGGGAAAGGCCAGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009681-'17-19,'17-18,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.174
Domain overlap (PFAM):
C1:
PF0016825=C2=PU(16.9=57.7)
A:
PF0016825=C2=FE(36.0=100)
C2:
PF0016825=C2=PD(44.9=90.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCTGGACTCTACGGCTT
R:
GTCTGCGCTCTCACCATCTTC
Band lengths:
173-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: