BtaEX6074119 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020566 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr17:73707945-73711591:-
Coord C1 exon
chr17:73711517-73711591
Coord A exon
chr17:73709554-73709651
Coord C2 exon
chr17:73707945-73708079
Length
98 bp
Sequences
Splice sites
3' ss Seq
GCTCTCCGTGTGCCCCCTAGGTC
3' ss Score
10.61
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
ATGACGAATCTCCTGGGCTCTACGGGTTCCTGAATGTCATCGTCCACTCTGCCAGCGGCTTTAAGCAGAGTTCAA
Seq A exon
GTCTGTACTGCACCCTGGAGGTGGATTCCTTCGGCTACTTTGTAAATAAAGCCAAGACGCGCGTCTACAGGGACACAGCCGAGCCCAATTGGAACGAG
Seq C2 exon
GAGTTTGAGATCGAGCTGGAAGGCTCGCAGACCCTGAGGATCCTGTGCTACGAGAAGTGTTACCACAAGACCAGGCTCGCCAAGGAGGACGGTGGGGAGAGCACGGACCGGATCGTGGGCAAGGGCCAGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020566-'22-24,'22-23,23-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.289
Domain overlap (PFAM):
C1:
PF0016825=C2=PU(16.7=57.7)
A:
PF0016825=C2=FE(35.6=100)
C2:
PF0016825=C2=PD(45.6=91.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACGAATCTCCTGGGCTCT
R:
CTCCCCACCGTCCTCCTTG
Band lengths:
174-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]