RnoEX6062429 @ rn6
Exon Skipping
Gene
ENSRNOG00000001304 | Bcr
Description
BCR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1307993]
Coordinates
chr20:14438459-14447792:-
Coord C1 exon
chr20:14447718-14447792
Coord A exon
chr20:14440779-14440876
Coord C2 exon
chr20:14438459-14438590
Length
98 bp
Sequences
Splice sites
3' ss Seq
TCCCTGTCCCTTTCTCACAGATC
3' ss Score
12.43
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
ATGATGAGTCTCCCGGACTCTACGGCTTCCTGCATGCCATCGTACATTCAGCCACCGGGTTTAAGCAGAGCTCAA
Seq A exon
ATCTGTACTGCACCCTGGAGGTGGATTCCTTTGGCTATTTTGTGAACAAAGCGAAGACTCGAGTCTACAGGGATACCACTGAGCCGAACTGGAATGAG
Seq C2 exon
GAGTTTGAGATAGAGCTCGAAGGCTCCCAGACCCTGCGGATACTATGCTATGAAAAGTGTTACAACAAAATGAAGATGGCGAAGGAGGATGGCGAGAGCGCTGACAAGCTCATGGGGAAAGGACAGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001304-'19-18,'19-17,20-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.136
Domain overlap (PFAM):
C1:
PF0016825=C2=PU(17.0=57.7)
A:
PF0016825=C2=FE(36.4=100)
C2:
PF0016825=C2=PD(44.3=88.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATCGTACATTCAGCCAC
R:
GGACCTGTCCTTTCCCCATGA
Band lengths:
171-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]