GgaEX0009544 @ galGal4
Exon Skipping
Gene
ENSGALG00000006695 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr15:8594426-8596137:-
Coord C1 exon
chr15:8596063-8596137
Coord A exon
chr15:8595261-8595358
Coord C2 exon
chr15:8594426-8594557
Length
98 bp
Sequences
Splice sites
3' ss Seq
GTCTGTCTCTCCTTTCTCAGATC
3' ss Score
11.74
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
ATGATGAATCTCCAGGTCTCTATGGATTCCTGAATGTCATTGTCCACTCTGCCACAGGATTCAAGCAAAGTTCAA
Seq A exon
ATCTGTATTGCACGTTAGAGGTCGATTCTTTTGGGTATTTTGTGAACAAGGCCAAAACCAGAGTGTACAGAGACACCACAGAGCCCAACTGGAATGAG
Seq C2 exon
GAGTTTGAGATTGAGTTGGAAGGCTCACAAACTCTGCGGATTTTGTGCTATGAAAAGTGCTACAACAAAATGAAGCTCACCAAAGAGGATGGAGAGAGCACAGATCGCATAATGGGAAAAGGACAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006695_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.114
Domain overlap (PFAM):
C1:
PF0016825=C2=PU(17.0=57.7)
A:
PF0016825=C2=FE(36.4=100)
C2:
PF0016825=C2=PD(44.3=88.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATTGTCCACTCTGCCACA
R:
TCTGTCCTTTTCCCATTATGCGA
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]