DreEX0016847 @ danRer10
Exon Skipping
Gene
ENSDARG00000079286 | bcr
Description
breakpoint cluster region [Source:ZFIN;Acc:ZDB-GENE-040724-43]
Coordinates
chr21:17208741-17216680:+
Coord C1 exon
chr21:17208741-17208838
Coord A exon
chr21:17210085-17210216
Coord C2 exon
chr21:17216621-17216680
Length
132 bp
Sequences
Splice sites
3' ss Seq
CTGTATTGTTTCTGCTTCAGGAG
3' ss Score
8.95
5' ss Seq
CCGGTATGA
5' ss Score
8.14
Exon sequences
Seq C1 exon
ATCTGTATTGCACATTAGAGGTGGACTCTTTCGGCATCTTTGTGAATAAAGCCAAAACAAGAGTGTACAGATACACCACAGAACCCAAGTGGAATGAG
Seq A exon
GAGTTTGAGATTGAGTTGGAAGGCTCTCATACATTGCGGCTACTTTGTTACGAGAAAAGCTACAACAAAGCCAAGGTGAATAAGGAGGATGGAGAGAGCACGGACAGAATTATGGGCAAAGGACAAATGCCG
Seq C2 exon
CTGGATCCTCAAATGCTCCAGGGTAAAGACTGGCAGAGAACAGTTATCCCTATGAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079286-'22-22,'22-20,23-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.386 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(36.4=100)
A:
PF0016825=C2=PD(44.3=88.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTATTGCACATTAGAGGTGGAC
R:
ATTCATAGGGATAACTGTTCTCTGCC
Band lengths:
154-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]