MmuEX6049009 @ mm10
Exon Skipping
Gene
ENSMUSG00000009681 | Bcr
Description
breakpoint cluster region [Source:MGI Symbol;Acc:MGI:88141]
Coordinates
chr10:75166045-75175336:+
Coord C1 exon
chr10:75166045-75166142
Coord A exon
chr10:75168107-75168238
Coord C2 exon
chr10:75175277-75175336
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTGGGGAACCACAGGAG
3' ss Score
2.69
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATCTCTACTGCACCCTGGAGGTGGATTCCTTTGGATATTTTGTGAATAAAGCAAAGACTCGAGTCTACAGGGACACAACTGAGCCAAACTGGAATGAG
Seq A exon
GAGTTTGAGATAGAGCTAGAAGGCTCCCAGACCCTGCGGATACTATGTTATGAAAAGTGTTACAACAAAATGAAGATGACGAAGGAAGATGGTGAGAGCGCAGACAAGCTCATGGGGAAAGGCCAGGTCCAG
Seq C2 exon
CTGGACCCCCAAACCCTACAGGACAGAGACTGGCAGCGGACTGTCATCGACATGAATGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009681-'36-40,'36-32,38-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.226 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(36.4=100)
A:
PF0016825=C2=PD(44.3=88.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCTACTGCACCCTGGAGG
R:
TTCATGTCGATGACAGTCCGC
Band lengths:
154-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types