DreEX6050516 @ danRer10
Exon Skipping
Gene
ENSDARG00000042329 | BCR (1 of 2)
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr8:30566569-30576097:+
Coord C1 exon
chr8:30566569-30566666
Coord A exon
chr8:30566869-30566988
Coord C2 exon
chr8:30576038-30576097
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTTGAATTTTGTGTTGACAGGAG
3' ss Score
3.67
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
ATCTGTACTGTACATTGGAGGTGGACTCGTTCGGCTACTTTGTGAACAAGGCAAAGACTCGTGTTTACAGAGACACTACAGAGCCAAACTGGAACGAG
Seq A exon
GAGTTTGAGATCGAGCTGGAGGGCTCACAGACCCTCAGACTGCTGTGTTATAGTAAAATCAAACAGTGCAGGGATGATGGCGAAAACATTGATCGCGTCATGGCCAAGGGGCAGATTCAG
Seq C2 exon
CTGGATCCGCAGTCGCTGCAGGGTAAAGACTGGCAGAGGACAGTAATCAGCATGAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042329-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.025 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(42.7=100)
A:
PF0016825=C2=PD(34.7=65.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACTGTACATTGGAGGTGGACT
R:
CCCATTCATGCTGATTACTGTCCT
Band lengths:
155-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]