RnoEX0014491 @ rn6
Exon Skipping
Gene
ENSRNOG00000001304 | Bcr
Description
BCR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1307993]
Coordinates
chr20:14428952-14440876:-
Coord C1 exon
chr20:14440779-14440876
Coord A exon
chr20:14438459-14438590
Coord C2 exon
chr20:14428952-14429011
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTCGGGGAACCACAGGAG
3' ss Score
2
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATCTGTACTGCACCCTGGAGGTGGATTCCTTTGGCTATTTTGTGAACAAAGCGAAGACTCGAGTCTACAGGGATACCACTGAGCCGAACTGGAATGAG
Seq A exon
GAGTTTGAGATAGAGCTCGAAGGCTCCCAGACCCTGCGGATACTATGCTATGAAAAGTGTTACAACAAAATGAAGATGGCGAAGGAGGATGGCGAGAGCGCTGACAAGCTCATGGGGAAAGGACAGGTCCAG
Seq C2 exon
CTGGACCCCCAAACCCTCCAGGACAGAGACTGGCAGCGGACTGTCATCGACATGAATGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001304-'20-23,'20-18,21-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.136 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(36.4=100)
A:
PF0016825=C2=PD(44.3=88.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGTACTGCACCCTGGAGG
R:
TTCATGTCGATGACAGTCCGC
Band lengths:
154-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]