BtaEX6074120 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020566 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr17:73699933-73709651:-
Coord C1 exon
chr17:73709554-73709651
Coord A exon
chr17:73707945-73708079
Coord C2 exon
chr17:73699933-73699992
Length
135 bp
Sequences
Splice sites
3' ss Seq
CCTCCTCTCTCGGGGCACAGGAG
3' ss Score
6.44
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTCTGTACTGCACCCTGGAGGTGGATTCCTTCGGCTACTTTGTAAATAAAGCCAAGACGCGCGTCTACAGGGACACAGCCGAGCCCAATTGGAACGAG
Seq A exon
GAGTTTGAGATCGAGCTGGAAGGCTCGCAGACCCTGAGGATCCTGTGCTACGAGAAGTGTTACCACAAGACCAGGCTCGCCAAGGAGGACGGTGGGGAGAGCACGGACCGGATCGTGGGCAAGGGCCAGGCACAG
Seq C2 exon
CTGGACCCTCAGACCCTGCAGGACAGAGACTGGCAGCGGACCGCCATCGCCATGAACGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020566-'23-27,'23-24,24-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.289 C2=0.050
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(35.6=100)
A:
PF0016825=C2=PD(45.6=91.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTACTGCACCCTGGAGG
R:
GTTCATGGCGATGGCGGTC
Band lengths:
154-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]