GgaEX1010749 @ galGal4
Exon Skipping
Gene
ENSGALG00000006695 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr15:8586089-8595358:-
Coord C1 exon
chr15:8595261-8595358
Coord A exon
chr15:8594426-8594557
Coord C2 exon
chr15:8586089-8586148
Length
132 bp
Sequences
Splice sites
3' ss Seq
CCTTTTCTGGTGCCCTGCAGGAG
3' ss Score
10.17
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATCTGTATTGCACGTTAGAGGTCGATTCTTTTGGGTATTTTGTGAACAAGGCCAAAACCAGAGTGTACAGAGACACCACAGAGCCCAACTGGAATGAG
Seq A exon
GAGTTTGAGATTGAGTTGGAAGGCTCACAAACTCTGCGGATTTTGTGCTATGAAAAGTGCTACAACAAAATGAAGCTCACCAAAGAGGATGGAGAGAGCACAGATCGCATAATGGGAAAAGGACAGATCCAG
Seq C2 exon
CTGGACCCACAGACACTGCAGGACAAAGACTGGCAACGCACAGTCATCTCAATGAATGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006695-'35-29,'35-23,36-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.114 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(36.4=100)
A:
PF0016825=C2=PD(44.3=88.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTATTGCACGTTAGAGGTCGA
R:
CCATTCATTGAGATGACTGTGCG
Band lengths:
154-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]