HsaEX0000747 @ hg38
Exon Skipping
Gene
ENSG00000159842 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr17:1050050-1067242:-
Coord C1 exon
chr17:1067077-1067242
Coord A exon
chr17:1058745-1058867
Coord C2 exon
chr17:1050050-1050181
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGTGTCCCCATCTCCTGCAGAAA
3' ss Score
10.91
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
GAAGCACCAGCAGTATGACTGTAAGTGGTACATCCCCCTGGCCGACCTGGTGTTTCCATCCCCCGAGGAGTCTGAGGCCAGCCCCCAGGTGCACCCCTTCCCAGACCATGAGCTGGAGGACATGAAGATGAAGATCTCTGCCCTCAAGAGTGAAATCCAGAAGGAG
Seq A exon
AAAGCCAACAAAGGCCAGAGCCGGGCCATCGAGCGCCTGAAGAAGAAGATGTTTGAGAATGAGTTCCTGCTGCTGCTCAACTCCCCCACAATCCCGTTCAGGATCCACAATCGGAATGGAAAG
Seq C2 exon
GAGTTTGAGATCGAGCTGGAGGGCTCCCAGTCCCTGAGGATCCTGTGCTATGAGAAGTGCTATGACAAGACCAAGGTCAACAAGGACAACAATGAGATCGTGGACAAGATCATGGGCAAAGGACAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159842_MULTIEX1-7/21=6-12
Average complexity
C2
Mappability confidence:
89%=89=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.207 A=0.054 C2=0.005
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(45.5=98.2)
A:
PF0016924=PH=FE(25.3=100)
C2:
PF0016825=C2=PD(44.9=90.9)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGACCTGGTGTTTCCATC
R:
TTGCCCATGATCTTGTCCACG
Band lengths:
245-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development