MmuEX6087636 @ mm9
Exon Skipping
Gene
ENSMUSG00000017631 | Abr
Description
active BCR-related gene [Source:MGI Symbol;Acc:MGI:107771]
Coordinates
chr11:76269663-76272848:-
Coord C1 exon
chr11:76272683-76272848
Coord A exon
chr11:76270102-76270224
Coord C2 exon
chr11:76269663-76269738
Length
123 bp
Sequences
Splice sites
3' ss Seq
CCATGTCTCATCTCCTGCAGAAA
3' ss Score
9.46
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
AAAGCATCAGCAGTATGACTGTAAGTGGTACATCCCTCTGGCTGACTTAGTGTTCCCATCCCCTGAGGAGTCAGAGGCCAGTCCCCAGGTGCACCCCTTCCCAGACCACGAGCTCGAGGACATGAAAACGAAGATCTCTGCCCTCAAGAGTGAGATCCAGAAGGAG
Seq A exon
AAAGCCAACAAAGGACAGAGCCGAGCCATTGAGCGCCTCAAAAAGAAGATGTTTGAGAATGAGTTCTTACTGCTGCTCAATTCCCCAACGATCCCTTTCCGGATACACAATCGGAATGGAAAG
Seq C2 exon
AGTTACCTGTTTCTTCTGTCTTCTGACTATGAGAGGTCGGAGTGGAGAGAAGCGATTCAGAAGCTACAGAAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017631-'16-25,'16-24,18-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.268 A=0.073 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(36.7=81.5)
A:
PF0016924=PH=FE(25.3=100)
C2:
PF0016924=PH=PD(14.6=88.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGTAAGTGGTACATCCCTCT
R:
CTTCTTCTGTAGCTTCTGAATCGCT
Band lengths:
226-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: