GgaEX1005752 @ galGal4
Exon Skipping
Gene
ENSGALG00000004364 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr19:6328828-6329406:+
Coord C1 exon
chr19:6328828-6328993
Coord A exon
chr19:6329120-6329242
Coord C2 exon
chr19:6329331-6329406
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGTCCTCTCCCTGCCTGCAGAAA
3' ss Score
12.77
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GAAGCACCAGCAGTATGACTGCAAGTGGTACGTGCCCCTGGCTGACCTGGTGTTCCCCTCGCCGGAGGAGTCGGAGCACTGCCCACAGGTGCATGTCATCCCCGACCACGAGCTGGAGGACATGAAAATGAAGATCTCAGCCATCAAGAGTGAGGTGCAGAAGGAG
Seq A exon
AAAGCCAACAAAGGGCAGAGCCGTGCCATTGAGCGCCTCAAGAAGAAGATGTTTGAGAATGAGTTCTGGCTGCTCCTCAACTCACCCGCCATTCCCTTCCGCATCCACAACCGTAATGGAAAG
Seq C2 exon
AGCTATTTGTTCCTGCTGTCCTCTGACTACGAGAGGTCCGAATGGAGGGAGGCCATTCAGAAACTGCAGAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004364-'17-15,'17-14,18-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.073 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(34.8=100)
A:
PF0016924=PH=FE(25.3=100)
C2:
PF0016924=PH=PD(14.6=88.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCACCAGCAGTATGACT
R:
TGCAGTTTCTGAATGGCCTCC
Band lengths:
234-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]