DreEX6014033 @ danRer10
Exon Skipping
Gene
ENSDARG00000059587 | ABR (1 of 2)
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr5:61863450-61868986:+
Coord C1 exon
chr5:61863450-61863618
Coord A exon
chr5:61866501-61866623
Coord C2 exon
chr5:61868911-61868986
Length
123 bp
Sequences
Splice sites
3' ss Seq
ACTGATTTGTGTGTGAACAGAAA
3' ss Score
6.5
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
GCGGCATCAGCAGTATGAGTGTAAATGGTACATTCCTCTGGCTGATCTGAGCTTTCAGACACTGGACGAGTCGGATTCTCTCCCGCACGTTCAGACGCTTGCCGAGCACGAGATCGAGGAGATGAAGATCAAGATATCCTCCATCAAGAGCGAGATCCAGAAAGAGAAG
Seq A exon
AAAGCGCAGAAGGGTCAGAGCCGGAATGTGGATCGTCTCAGGAAGAAGATGAACGAGCAGGAGTCTTGTTTGCTGTTAAACTCCCCCACCATCCCATTCCGCATCCACAACAAACACGGCAAG
Seq C2 exon
AGCTACCTGTTCCTGCTGTCCTCAGATTATGAGAGGTCGGAATGGAGGGAAAGCATTCAGAAACTGCAGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059587-'14-13,'14-12,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.317 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(35.2=100)
A:
PF0016924=PH=FE(25.2=100)
C2:
PF0016924=PH=PD(14.5=88.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGCATCAGCAGTATGAGTG
R:
TCTTCTGCAGTTTCTGAATGCT
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]