BtaEX6085741 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008424 | ABR
Description
Bos taurus active BCR-related gene (ABR), mRNA. [Source:RefSeq mRNA;Acc:NM_001046204]
Coordinates
chr19:22383750-22388439:+
Coord C1 exon
chr19:22383750-22383915
Coord A exon
chr19:22387905-22388027
Coord C2 exon
chr19:22388364-22388439
Length
123 bp
Sequences
Splice sites
3' ss Seq
GTGCCCTCTGTCCCCTGCAGAAA
3' ss Score
11.35
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GAAGCACCAGCAGTATGACTGCAAATGGTACATCCCCCTGGCTGACCTAGTGTTTCCATCCCCTGAGGAGTCTGAAGCCAGTCCCCAGGTGCACCCCTTCCCAGACCACGAGCTGGAGGACATGAAAATGAAGATCTCTGCCCTTAAGAGTGAGATCCAGAAGGAG
Seq A exon
AAAGCCAACAAAGGACAGAGCCGGGCCATCGAACGCCTGAAGAAGAAGATGTTTGAGAATGAGTTCTTACTGCTGCTCAATTCCCCCACAATCCCGTTTCGGATCCACAATCGGAATGGAAAG
Seq C2 exon
AGCTACCTGTTCCTACTGTCCTCAGACTATGAGAGGTCAGAGTGGAGAGAAGCGATTCAGAAACTGCAGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008424-'38-17,'38-16,39-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.196 A=0.049 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(34.8=100)
A:
PF0016924=PH=FE(25.3=100)
C2:
PF0016924=PH=PD(14.6=88.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCACCAGCAGTATGACT
R:
CTTTCTTCTGCAGTTTCTGAATCGC
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]