RnoEX0005580 @ rn6
Exon Skipping
Gene
ENSRNOG00000056837 | Abr
Description
ABR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1306279]
Coordinates
chr10:64604303-64607241:-
Coord C1 exon
chr10:64607076-64607241
Coord A exon
chr10:64604748-64604870
Coord C2 exon
chr10:64604303-64604378
Length
123 bp
Sequences
Splice sites
3' ss Seq
CCATGTCTCATCTCCTGCAGAAA
3' ss Score
9.46
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
AAAACATCAGCAGTATGACTGTAAGTGGTACATCCCCCTGGCTGACTTAGTGTTCCCATCCCCTGAGGAGTCCGAGGCCAGTCCCCAGGTACACCCCTTCCCAGACCACGAGCTAGAGGACATGAAAGTGAAGATCTCTGCCCTCAAGAGTGAGATCCAGAAGGAG
Seq A exon
AAAGCCAACAAAGGACAGAGCCGAGCCATTGAGCGCCTCAAAAAGAAGATGTTTGAGAATGAGTTCTTACTGCTGCTCAATTCCCCAACGATCCCATTCCGGATACACAATCGGAATGGAAAG
Seq C2 exon
AGTTACCTGTTTCTTCTGTCTTCTGACTATGAGAGGTCGGAGTGGAGAGAAGCGATTCAGAAACTACAGAAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056837-'31-22,'31-21,33-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.196 A=0.049 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(34.8=100)
A:
PF0016924=PH=FE(25.3=100)
C2:
PF0016924=PH=PD(14.6=88.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGTAAGTGGTACATCCCCCT
R:
CCTTCTTCTGTAGTTTCTGAATCGC
Band lengths:
226-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]