HsaEX6019760 @ hg38
Exon Skipping
Gene
ENSG00000159842 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr17:1050050-1057102:-
Coord C1 exon
chr17:1056998-1057102
Coord A exon
chr17:1056035-1056109
Coord C2 exon
chr17:1050050-1050181
Length
75 bp
Sequences
Splice sites
3' ss Seq
GGGGCTTTTCTCTCTTGCAGACG
3' ss Score
10.79
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
ATCTCCAGGCCTTTGTCCTGAGCTCAGTGGAGCTCCAGGTGCTCACAGGATCCTGTTTCAAGCTTAGGACTGTACACAACATTCCTGTCACCAGCAATAAAGACG
Seq A exon
ACGATGAGTCTCCAGGACTCTATGGCTTCCTTCATGTCATCGTCCACTCTGCCAAGGGATTTAAGCAATCAGCCA
Seq C2 exon
GAGTTTGAGATCGAGCTGGAGGGCTCCCAGTCCCTGAGGATCCTGTGCTATGAGAAGTGCTATGACAAGACCAAGGTCAACAAGGACAACAATGAGATCGTGGACAAGATCATGGGCAAAGGACAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159842_MULTIEX1-10/21=9-12
Average complexity
C2
Mappability confidence:
92%=92=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.000 C2=0.005
Domain overlap (PFAM):
C1:
NO
A:
PF0016825=C2=PU(16.9=57.7)
C2:
PF0016825=C2=PD(44.9=90.9)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTTGTCCTGAGCTCAGTG
R:
CCTTGTTGACCTTGGTCTTGTCA
Band lengths:
182-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains