DreEX6083900 @ danRer10
Exon Skipping
Gene
ENSDARG00000079286 | bcr
Description
breakpoint cluster region [Source:ZFIN;Acc:ZDB-GENE-040724-43]
Coordinates
chr21:17206481-17208838:+
Coord C1 exon
chr21:17206481-17206585
Coord A exon
chr21:17208539-17208613
Coord C2 exon
chr21:17208741-17208838
Length
75 bp
Sequences
Splice sites
3' ss Seq
CATTATTCCTATACTTTCAGAGG
3' ss Score
6.55
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
GCTTTAAGACCTTCAACTTGTCATCCATGGAGCTTCAGATGCTCACCAACTCTTGTGTCAAACTCCAGACGGTCCATCAGTTGCCTCTCACTGTCAATAAAGAGG
Seq A exon
AGGATGAATCTACTGGACTGTATGGATTCCTGAATGTAATCGTCCATTCTGCCTCTGGACTTAAACAGAGCTTAA
Seq C2 exon
ATCTGTATTGCACATTAGAGGTGGACTCTTTCGGCATCTTTGTGAATAAAGCCAAAACAAGAGTGTACAGATACACCACAGAACCCAAGTGGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079286-'20-19,'20-17,21-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0016825=C2=PU(17.0=57.7)
C2:
PF0016825=C2=FE(36.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCTTCAGATGCTCACCA
R:
TCCACTTGGGTTCTGTGGTGT
Band lengths:
171-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]