MmuEX6049011 @ mm10
Exon Skipping
Gene
ENSMUSG00000009681 | Bcr
Description
breakpoint cluster region [Source:MGI Symbol;Acc:MGI:88141]
Coordinates
chr10:75159786-75166142:+
Coord C1 exon
chr10:75159786-75159890
Coord A exon
chr10:75160330-75160404
Coord C2 exon
chr10:75166045-75166142
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTCTTTGTTCTCTTACACAGATG
3' ss Score
10.78
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTTTCAAAAGTTTCTCTCTGACATCTGTGGAGCTACAAATGCTGACCAACTCATGTGTAAAACTTCAGACGGTTCACCACATTCCACTGACCATCAACAAAGAAG
Seq A exon
ATGACGAGTCTCCTGGACTCTACGGCTTCCTGCATGTCATCGTCCACTCAGCCACCGGCTTTAAGCAGAGCTCAA
Seq C2 exon
ATCTCTACTGCACCCTGGAGGTGGATTCCTTTGGATATTTTGTGAATAAAGCAAAGACTCGAGTCTACAGGGACACAACTGAGCCAAACTGGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009681-'26-33,'26-26,34-33=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
NO
A:
PF0016825=C2=PU(17.0=57.7)
C2:
PF0016825=C2=FE(36.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGCTACAAATGCTGACCA
R:
GTTTGGCTCAGTTGTGTCCCT
Band lengths:
168-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types