DreEX6050518 @ danRer10
Exon Skipping
Gene
ENSDARG00000042329 | BCR (1 of 2)
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr8:30562805-30566666:+
Coord C1 exon
chr8:30562805-30562909
Coord A exon
chr8:30563331-30563405
Coord C2 exon
chr8:30566569-30566666
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTTCCCCCACACAGACG
3' ss Score
9.81
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
GTTTCAAGAGTTTTTCTTTGACTTCTCTGGAGTTGCAGATGCTTACAAACTCTTGCGTGAAGCTACAGACAGTTCACAGCATTCCTCTGACAGTCAATAAAGATG
Seq A exon
ACGATGAATCCACGGGGCTTTGCGGCTTTCTGAATGTGATTGTTCATTCTGCAACAGGACTGAAACAGAGCTTGA
Seq C2 exon
ATCTGTACTGTACATTGGAGGTGGACTCGTTCGGCTACTTTGTGAACAAGGCAAAGACTCGTGTTTACAGAGACACTACAGAGCCAAACTGGAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042329-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0016825=C2=PU(20.0=57.7)
C2:
PF0016825=C2=FE(42.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCTCTGGAGTTGCAGATGC
R:
CTCGTTCCAGTTTGGCTCTGT
Band lengths:
183-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]