GgaEX6014160 @ galGal4
Exon Skipping
Gene
ENSGALG00000006695 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr15:8595261-8596664:-
Coord C1 exon
chr15:8596560-8596664
Coord A exon
chr15:8596063-8596137
Coord C2 exon
chr15:8595261-8595358
Length
75 bp
Sequences
Splice sites
3' ss Seq
TCCTTTGCTTTGTTGTATAGATG
3' ss Score
7.56
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GCTTTAAAAGCTTCTCACTCACATCGGTGGAGCTCCAGATGCTGACAAACTCCTGTGTGAAACTCCAGACAGTCCACAACATTCCCCTCACTATCAATAAGGAAG
Seq A exon
ATGATGAATCTCCAGGTCTCTATGGATTCCTGAATGTCATTGTCCACTCTGCCACAGGATTCAAGCAAAGTTCAA
Seq C2 exon
ATCTGTATTGCACGTTAGAGGTCGATTCTTTTGGGTATTTTGTGAACAAGGCCAAAACCAGAGTGTACAGAGACACCACAGAGCCCAACTGGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006695-'33-22,'33-21,34-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0016825=C2=PU(17.0=57.7)
C2:
PF0016825=C2=FE(36.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCTCACTCACATCGGTGG
R:
GGGCTCTGTGGTGTCTCTGTA
Band lengths:
182-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]