RnoEX6062428 @ rn6
Exon Skipping
Gene
ENSRNOG00000001304 | Bcr
Description
BCR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1307993]
Coordinates
chr20:14440779-14448379:-
Coord C1 exon
chr20:14448275-14448379
Coord A exon
chr20:14447718-14447792
Coord C2 exon
chr20:14440779-14440876
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTCCTTGGTTTCTTGCACAGATG
3' ss Score
8.85
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTTTCAAAAGTTTCTCTCTGACATCTGTGGAGCTACAGATGCTGACCAACTCGTGTGTAAAACTTCAGACCGTTCACCACATTCCACTGACCATCAACAAAGAAG
Seq A exon
ATGATGAGTCTCCCGGACTCTACGGCTTCCTGCATGCCATCGTACATTCAGCCACCGGGTTTAAGCAGAGCTCAA
Seq C2 exon
ATCTGTACTGCACCCTGGAGGTGGATTCCTTTGGCTATTTTGTGAACAAAGCGAAGACTCGAGTCTACAGGGATACCACTGAGCCGAACTGGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001304-'18-17,'18-16,19-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0016825=C2=PU(17.0=57.7)
C2:
PF0016825=C2=FE(36.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCTACAGATGCTGACCA
R:
TTCCAGTTCGGCTCAGTGGTA
Band lengths:
172-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]