BtaEX0005460 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020566 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr17:73709554-73712294:-
Coord C1 exon
chr17:73712190-73712294
Coord A exon
chr17:73711517-73711591
Coord C2 exon
chr17:73709554-73709651
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTCTCTGGTCTCTTGCACAGATG
3' ss Score
9.57
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GTTTCAAGAGCTTCTCGCTGACGTCCGTGGAGTTGCAGATGCTGACGAACTCGTGTGTCAAACTGCAGACCGTCCACAGCATCCCGCTGACCATCAACAAGGAAG
Seq A exon
ATGACGAATCTCCTGGGCTCTACGGGTTCCTGAATGTCATCGTCCACTCTGCCAGCGGCTTTAAGCAGAGTTCAA
Seq C2 exon
GTCTGTACTGCACCCTGGAGGTGGATTCCTTCGGCTACTTTGTAAATAAAGCCAAGACGCGCGTCTACAGGGACACAGCCGAGCCCAATTGGAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020566-'21-23,'21-22,22-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0016825=C2=PU(16.7=57.7)
C2:
PF0016825=C2=FE(35.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTTGCAGATGCTGACGAA
R:
CTCGTTCCAATTGGGCTCGG
Band lengths:
175-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development