RnoEX0005583 @ rn6
Exon Skipping
Gene
ENSRNOG00000056837 | Abr
Description
ABR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1306279]
Coordinates
chr10:64600613-64603874:-
Coord C1 exon
chr10:64603770-64603874
Coord A exon
chr10:64602712-64602786
Coord C2 exon
chr10:64600613-64600710
Length
75 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTTGCTCTCTTGCAGACG
3' ss Score
12.39
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
ATCTCCAGGCCTTTGTCCTGAGCTCTGTGGAGCTCCAGGTGCTCACGGGATCCTGTTTCAAGCTTAGGACTGTGCACAACATTCCTGTCACCAGCAATAAAGATG
Seq A exon
ACGATGAGTCTCCAGGACTGTACGGCTTCCTTCATGTCATCGTCCACTCTGCCAAGGGCTTTAAACAATCAGCCA
Seq C2 exon
ATCTTTACTGTACTCTGGAGGTGGATTCCTTTGGCTATTTTGTCAGCAAAGCCAAAACCAGGGTGTTTCGGGACACGACAGAGCCCAAGTGGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056837-'36-26,'36-24,37-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0016825=C2=PU(16.9=57.7)
C2:
PF0016825=C2=FE(36.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCCAGGCCTTTGTCCTGA
R:
TCCCGAAACACCCTGGTTTTG
Band lengths:
178-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]