Special

GgaEX1005755 @ galGal4

Exon Skipping

Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr19:6330042-6330592:+
Coord C1 exon
chr19:6330042-6330116
Coord A exon
chr19:6330255-6330352
Coord C2 exon
chr19:6330461-6330592
Length
98 bp
Sequences
Splice sites
3' ss Seq
AGCAGTGTCTCCTCCCCCAGACC
3' ss Score
7.49
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
ATGATGAGTCCCCCGGGCTCTATGGGTTCCTGCACGTCATTGTCCACTCCGCCAAGGGCTTCAAGCAGTCAGCCA
Seq A exon
ACCTGTACTGCACACTGGAGGTGGATTCCTTTGGCTATTTTGTCAGCAAAGCCAAGACCAGGGTTTTTCGGGACACGACAGAGCCGCAGTGGAATGAG
Seq C2 exon
GAGTTTGAGATTGAGCTGGAAGGTTCCCAGTCCCTGCGCATCCTCTGCTATGAGAAGTGCTATGACAAGACCAAGCTCAACAAGGACAACAATGAAATTGTGGACAAGATCATGGGCAAGGGGCAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004364-'21-20,'21-19,22-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.023
Domain overlap (PFAM):

C1:
PF0016825=C2=PU(16.9=57.7)
A:
PF0016825=C2=FE(36.0=100)
C2:
PF0016825=C2=PD(44.9=90.9)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
ALTERNATIVE
(bcr)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGCACGTCATTGTCCAC
R:
CCCTTGCCCATGATCTTGTCC
Band lengths:
171-269
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]