MmuEX6087640 @ mm9
Exon Skipping
Gene
ENSMUSG00000017631 | Abr
Description
active BCR-related gene [Source:MGI Symbol;Acc:MGI:107771]
Coordinates
chr11:76265355-76268092:-
Coord C1 exon
chr11:76268018-76268092
Coord A exon
chr11:76265833-76265930
Coord C2 exon
chr11:76265355-76265486
Length
98 bp
Sequences
Splice sites
3' ss Seq
GTCTGTCCTTCCTCCTACAGATC
3' ss Score
13.18
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATGATGAGTCTCCAGGACTGTACGGCTTCCTTCATGTCATCGTCCACTCTGCCAAGGGCTTTAAACAGTCAGCCA
Seq A exon
ATCTTTACTGTACTCTGGAGGTGGATTCCTTTGGCTATTTTGTCAGCAAAGCCAAGACCAGGGTGTTTCGGGACACGACAGAGCCCAAGTGGGATGAG
Seq C2 exon
GAGTTTGAGATTGAGCTGGAGGGTTCACAGTCCCTGAGGATCCTGTGTTATGAGAAGTGCTACGACAAGACCAAGGTCAACAAAGACAACAATGAGATTGTGGACAAGATCATGGGCAAGGGGCAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017631-'22-29,'22-28,23-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PU(16.9=57.7)
A:
PF0016825=C2=FE(36.0=100)
C2:
PF0016825=C2=PD(44.9=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTTCCTTCATGTCATCGT
R:
CCCTTGCCCATGATCTTGTCC
Band lengths:
175-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: