BtaEX6085739 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008424 | ABR
Description
Bos taurus active BCR-related gene (ABR), mRNA. [Source:RefSeq mRNA;Acc:NM_001046204]
Coordinates
chr19:22388364-22389792:+
Coord C1 exon
chr19:22388364-22388439
Coord A exon
chr19:22388893-22388997
Coord C2 exon
chr19:22389718-22389792
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCTCTTGGCTCCTCCTACAGATC
3' ss Score
10.24
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
AGCTACCTGTTCCTACTGTCCTCAGACTATGAGAGGTCAGAGTGGAGAGAAGCGATTCAGAAACTGCAGAAGAAAG
Seq A exon
ATCTTCAGGCCTTTGTCCTGAGCTCGGTGGAGCTCCAGGTGCTCACAGGATCCTGTTTCAAACTTAGGACTGTACACAACATTCCTGTCACCAGCAATAAAGACG
Seq C2 exon
ACGACGAGTCTCCAGGGCTCTATGGCTTCCTCCATGTCATCGTCCATTCTGCCAAGGGGTTTAAGCAGTCAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008424-'40-19,'40-18,41-19=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(14.6=88.5)
A:
NO
C2:
PF0016825=C2=PU(16.9=57.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTACCTGTTCCTACTGTCCT
R:
GACTGCTTAAACCCCTTGGCA
Band lengths:
146-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]