RnoEX0005582 @ rn6
Exon Skipping
Gene
ENSRNOG00000056837 | Abr
Description
ABR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1306279]
Coordinates
chr10:64602712-64604378:-
Coord C1 exon
chr10:64604303-64604378
Coord A exon
chr10:64603770-64603874
Coord C2 exon
chr10:64602712-64602786
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCACTTGGCTCCCCCCACAGATC
3' ss Score
10.52
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
AGTTACCTGTTTCTTCTGTCTTCTGACTATGAGAGGTCGGAGTGGAGAGAAGCGATTCAGAAACTACAGAAGAAGG
Seq A exon
ATCTCCAGGCCTTTGTCCTGAGCTCTGTGGAGCTCCAGGTGCTCACGGGATCCTGTTTCAAGCTTAGGACTGTGCACAACATTCCTGTCACCAGCAATAAAGATG
Seq C2 exon
ACGATGAGTCTCCAGGACTGTACGGCTTCCTTCATGTCATCGTCCACTCTGCCAAGGGCTTTAAACAATCAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056837-'34-24,'34-23,36-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(14.6=88.5)
A:
NO
C2:
PF0016825=C2=PU(16.9=57.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTTTCTTCTGTCTTCTGACT
R:
GGCTGATTGTTTAAAGCCCTTGG
Band lengths:
146-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]