HsaEX6019759 @ hg19
Exon Skipping
Gene
ENSG00000159842 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:81]
Coordinates
chr17:959275-961285:-
Coord C1 exon
chr17:961210-961285
Coord A exon
chr17:960238-960342
Coord C2 exon
chr17:959275-959349
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCTCTCGGCTCTCCCTCCAGATC
3' ss Score
12.28
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
Exon sequences
Seq C1 exon
AGTTACCTGTTCCTACTGTCCTCGGACTACGAGAGGTCAGAGTGGAGAGAAGCAATTCAGAAACTACAGAAGAAGG
Seq A exon
ATCTCCAGGCCTTTGTCCTGAGCTCAGTGGAGCTCCAGGTGCTCACAGGATCCTGTTTCAAGCTTAGGACTGTACACAACATTCCTGTCACCAGCAATAAAGACG
Seq C2 exon
ACGATGAGTCTCCAGGACTCTATGGCTTCCTTCATGTCATCGTCCACTCTGCCAAGGGATTTAAGCAATCAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159842-'20-18,'20-17,21-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(19.8=92.3),PF063236=Phage_antiter_Q=FE(27.2=100)
A:
PF063236=Phage_antiter_Q=PD(10.9=27.8)
C2:
PF0016825=C2=PU(16.9=57.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTTCCTACTGTCCTCGG
R:
GGCTGATTGCTTAAATCCCTTGG
Band lengths:
146-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)