DreEX0000098 @ danRer10
Exon Skipping
Gene
ENSDARG00000059587 | ABR (1 of 2)
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr5:61868911-61883099:+
Coord C1 exon
chr5:61868911-61868986
Coord A exon
chr5:61870915-61871019
Coord C2 exon
chr5:61882953-61883099
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTTTGTGTGTTTCAGACC
3' ss Score
11.43
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
AGCTACCTGTTCCTGCTGTCCTCAGATTATGAGAGGTCGGAATGGAGGGAAAGCATTCAGAAACTGCAGAAGAAAG
Seq A exon
ACCTGCAGGCATGTGTGTTGAGTTCAGTAGAGCTGCAAGTGTTAACCGGCTCATGTTTTAAACTCAGAACTGTTCACAACATCCCCGTCACCAGCAACAAAGATG
Seq C2 exon
ATGAGGAATCTCCTGGTCTGTACGGCTTCCTGCATGTGATTGTCCATAAAGCCACAGGCTTCAAGGAATCTGCCAGTAAGTTATTTTAGTTTGTTTTCTATTTCACTTGCCAAAACTGACAAAAAATTACTAAAAGAGAAGATTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059587_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.111 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(14.5=88.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTGTTCCTGCTGTCCTCA
R:
TTGTCAGTTTTGGCAAGTGAAA
Band lengths:
195-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]