GgaEX1005753 @ galGal4
Exon Skipping
Gene
ENSGALG00000004364 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr19:6329331-6330116:+
Coord C1 exon
chr19:6329331-6329406
Coord A exon
chr19:6329558-6329662
Coord C2 exon
chr19:6330042-6330116
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCTCTGCTGTCCTCTCGCAGACC
3' ss Score
12.28
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
AGCTATTTGTTCCTGCTGTCCTCTGACTACGAGAGGTCCGAATGGAGGGAGGCCATTCAGAAACTGCAGAAAAAAG
Seq A exon
ACCTCCAGGCCTTTGTGCTGAGCTCGGTGGAGCTGCAGGTGCTGACAGGGTCCTGCTTCAAGCTACGCACTGTCCACAACATCCCGGTCACCAGCAATAAGGATG
Seq C2 exon
ATGATGAGTCCCCCGGGCTCTATGGGTTCCTGCACGTCATTGTCCACTCCGCCAAGGGCTTCAAGCAGTCAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004364-'19-18,'19-17,20-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(14.6=88.5)
A:
NO
C2:
PF0016825=C2=PU(16.9=57.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTATTTGTTCCTGCTGTCCT
R:
CTGACTGCTTGAAGCCCTTGG
Band lengths:
148-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]