MmuEX6087641 @ mm9
Exon Skipping
Gene
ENSMUSG00000017631 | Abr
Description
active BCR-related gene [Source:MGI Symbol;Acc:MGI:107771]
Coordinates
chr11:76238769-76265930:-
Coord C1 exon
chr11:76265833-76265930
Coord A exon
chr11:76265355-76265486
Coord C2 exon
chr11:76238769-76238828
Length
132 bp
Sequences
Splice sites
3' ss Seq
TCCTTCCTGTCTCTCACCAGGAG
3' ss Score
12.45
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATCTTTACTGTACTCTGGAGGTGGATTCCTTTGGCTATTTTGTCAGCAAAGCCAAGACCAGGGTGTTTCGGGACACGACAGAGCCCAAGTGGGATGAG
Seq A exon
GAGTTTGAGATTGAGCTGGAGGGTTCACAGTCCCTGAGGATCCTGTGTTATGAGAAGTGCTACGACAAGACCAAGGTCAACAAAGACAACAATGAGATTGTGGACAAGATCATGGGCAAGGGGCAGATCCAG
Seq C2 exon
CTGGATCCACAGACAGTAGAAAGCAAGAACTGGCATACGGACGTGATTGAAATGAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017631-'23-32,'23-29,24-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(36.0=100)
A:
PF0016825=C2=PD(44.9=90.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTACTGTACTCTGGAGGTGGA
R:
CCCATTCATTTCAATCACGTCCG
Band lengths:
157-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: